Microbiologist at EDCD, Nepal

Babita Gautam
Microbiologist

Working at the intersection of infectious disease, diagnostics and public health — from antimicrobial resistance in the lab to malaria surveillance across all seven provinces of Nepal.

Kathmandu, Bagmati, Nepal M.Sc. Medical Microbiology, Tribhuvan University
Portrait of Babita Gautam, microbiologist based in Kathmandu, Nepal
Current role
EDCDMalaria Program, Global Fund
Experience
4+ yrsClinical, commercial & public-health labs
Speciality
AMRAntimicrobial resistance & diagnostics
Publication
TUJMTU Journal of Microbiology, 2022

Areas of focus

Where diagnostics meet public health

Three questions shape the work — why pathogens stop responding to treatment, how infections behave in immunocompromised patients, and how a country builds diagnostic capacity it can trust.

Antimicrobial resistance

Detecting and characterising resistance mechanisms — including sul1 and dfrA1 genes — and tracing how prophylactic regimens shape resistance patterns in the populations that depend on them.

HIV-associated infections

Master's research on bacteria isolated from HIV-positive patients, examining the link between Cotrimoxazole Preventive Therapy and emerging bacterial resistance.

Vector-borne disease & elimination

Malaria surveillance, microscopy quality assurance and localisation of WHO frameworks such as integrated Drug Efficacy Surveillance (iDES) for Nepal's elimination programme.

About

A question that became a career

Quality assurance in diagnostics isn't about passing an assessment — it's about the lives that depend on getting the diagnosis right.
Babita Gautam

I started out curious about why certain bacteria resist treatment and how that shapes patient outcomes. That single question has guided my research, my clinical work, and the public health role I'm in today.

My training runs from bench to bedside. At Sukraraj Tropical and Infectious Diseases Hospital I worked hands-on across microbiology, hematology, serology, parasitology and virology — a year that permanently changed how I think about lab work, because I could see exactly how a result travelled to a patient.

At Om Surgical Concern I moved to the other side of the bench, supporting and training clinical laboratories across Nepal on in-vitro diagnostic instruments. Today, at the Epidemiology and Disease Control Division, I work on the Global Fund-supported Malaria Program — surveillance, laboratory quality management, SOP development and diagnostic capacity building.

I'm drawn to AMR, HIV-associated infections and vector-borne diseases, especially in settings where diagnostic capacity is still growing. My goal is to keep building skills and contributing to work that makes a practical difference in how these diseases are detected and managed.

Experience

From clinical bench to national programme

  1. Dec 2025 — Present

    Microbiologist / Laboratory Specialist

    Epidemiology and Disease Control Division (EDCD), Teku, Kathmandu Full-time

    Working on the Global Fund-funded Malaria Program. Responsibilities span malaria surveillance, laboratory quality management, SOP development and diagnostic capacity building — supporting Nepal's national path toward malaria elimination.

    • Malaria surveillance
    • Lab quality management
    • SOP development
    • Capacity building
  2. Jun 2024 — Dec 2025

    Application Officer

    Om Surgical Concern Pvt. Ltd., Kathmandu Full-time

    Provided technical support and training for in-vitro diagnostic instruments across clinical laboratories in Nepal. Represented the company as a speaker at a Continuing Medical Education seminar, introducing novel diagnostic parameters on the Boditech AFIAS-1 analyzer to healthcare professionals.

    • IVD instrumentation
    • Clinical training
    • Technical support
    • CME speaking
  3. Sep 2021 — Aug 2022

    Microbiologist

    Sukraraj Tropical and Infectious Diseases Hospital, Teku, Kathmandu Internship

    Hands-on clinical diagnostics across microbiology, hematology, serology, parasitology and virology. A year that deepened my understanding of how laboratory work directly supports patient care.

    • Clinical diagnostics
    • Serology
    • Parasitology
    • Phlebotomy

Research

Resistance, tracked from gene to community

Two theses, both asking how resistant organisms move through populations that are least equipped to fight them.

Master's thesis · Mar – Dec 2022

Antimicrobial resistance in bacteria isolated from HIV-positive patients

Investigated AMR patterns in bacterial isolates from HIV-positive patients, detecting sul1 and dfrA1 resistance genes using E-test and PCR. The study examined the relationship between Cotrimoxazole Preventive Therapy and the emergence of bacterial resistance.

Central Department of Microbiology, TU · E-test · PCR · Molecular genetics

Bachelor's thesis · Feb – May 2018

Nasal carriage of multidrug-resistant Staphylococcus aureus among school children

Examined nasal carriage of multidrug-resistant Staphylococcus aureus among school children in Kathmandu, characterising community-level reservoirs of drug-resistant organisms outside the hospital setting.

Published Tribhuvan University Journal of Microbiology, 2022

Expertise

Technical & professional capabilities

Laboratory & microbiology

  • Microbial techniques & culture
  • Antimicrobial susceptibility testing
  • E-test / MIC determination
  • Clinical diagnostics
  • Serology & parasitology
  • Hematology & virology
  • Phlebotomy

Molecular & research

  • Molecular genetics
  • Polymerase chain reaction (PCR)
  • Resistance gene detection
  • Research design & methodology
  • Scientific writing & publication
  • Data analysis

Public health & quality

  • Disease surveillance systems
  • Malaria microscopy & QA
  • Laboratory quality management
  • SOP development
  • WHO framework localisation (iDES)
  • Diagnostic capacity building
  • Training & technical facilitation

Education

Academic background

M.Sc. Medical Microbiology & Bacteriology

Central Department of Microbiology, Tribhuvan University

Advanced microbiology techniques, pathogen-host interactions and antimicrobial resistance mechanisms, with a research focus on AMR in HIV-positive patients.

Feb 2018 — Dec 2022 Medical Microbiology & Bacteriology

B.Sc. Microbiology

Padma Kanya Multiple Campus

Foundation in general and applied microbiology, with a final-year research project on drug-resistant Staphylococcus aureus in community settings.

Jan 2014 — Aug 2018 General Microbiology

Field notes

From the lab, the field, and the podium

Recent work in malaria surveillance, diagnostic quality assurance and medical education — shared as it happened.

Malaria microscopy competency assessment at VBDRTC, Hetauda

Asar 2083 · VBDRTC, Hetauda

External Competency Assessment for Malaria Microscopy

Helped organise a WHO-standard proficiency evaluation for malaria microscopists from all seven provinces of Nepal, under EDCD. Four microscopists secured Level 1 and four secured Level 2 competency — alongside external WHO facilitator Dr. Kumudu Gunasekera.

Read the post on LinkedIn
National consultative meeting on malaria surveillance protocols

National consultative meeting

Upgrading surveillance for the Malaria Elimination Program

Data-driven surveillance is the cornerstone of disease elimination. Contributed to a national consultation on strengthening surveillance protocols — work that shortens the distance between detection and response.

Read the post on LinkedIn
Consultative meeting on localising the WHO iDES protocol

WHO framework localisation

Localising the integrated Drug Efficacy Surveillance protocol

Translating global standards into local public health action — adapting the WHO-recommended iDES framework to Nepal's context, a vital step for robust diagnostics and the national path to malaria elimination.

Read the post on LinkedIn
Babita Gautam speaking at a Continuing Medical Education seminar

May 2024 · Medical College & Teaching Hospital

Invited speaker, Continuing Medical Education seminar

Presented novel diagnostic parameters on the Boditech AFIAS-1 analyzer to an audience of clinicians and laboratory professionals, representing Om Surgical Concern Pvt. Ltd.

Read the post on LinkedIn

Contact

Let's talk about diagnostics, AMR, or the work ahead

Open to research collaboration, laboratory quality and capacity-building projects, and conversations with anyone working on infectious disease in resource-limited settings.

Based in
Kathmandu, Bagmati Province, Nepal
Currently
Microbiologist, EDCD — Malaria Program